E-MTAB-1668 - Transcription profiling by high throughput sequencing of Arabidopsis seedling root and shoot with or without mild transient salt treatment

Status
Released on 14 May 2014, last updated on 3 March 2016
Organism
Arabidopsis thaliana
Samples (4)
Protocols (5)
Description
A relationship between transcript level and histone modifications is apparent in steady state but their dynamic relationship remains to be understood. In this study we used RNA-sequencing to determine transcript levels in Arabidopsis thaliana plants after a short, mild salt treatment at seedling stage (モpriming treatmentヤ: 50 mM NaCl for 24 hours). The obtained dataset was compared with genome-wide histone modification landscapes measured in the same plant material (see parallel submission of ChIP-Seq data in ArrayExpress: https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1663).
Experiment types
RNA-seq of coding RNA, co-expression, in vivo, stimulus or stress
Contact
Citation
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-MTAB-1668.idf.txt
Sample and data relationshipE-MTAB-1668.sdrf.txt
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