E-MTAB-1656 - DNA:RNA immunoprecipitation and tiling microarray (DRIP-chip) to obtain the genome-wide distribution of DNA:RNA hybrid prone loci in Saccharomyces cerevisiae

Status
Last updated on 15 August 2013, released on 30 September 2013
Organism
Saccharomyces cerevisiae
Samples (10)
Array (1)
Protocols (7)
Description
Experiment to obtain the genome-wide distribution of DNA:RNA hybrid prone loci in Saccharomyces cerevisiae by DNA:RNA immunoprecipitation and tiling microarray (DRIP-chip). Samples: wild type, Rnase H deletion mutant, hpr1 deletion mutant, sen1-1 temperature sensitive mutant.
Experiment types
ChIP-chip by array, binding site identification design, in vivo
Contact
Citation
Genome-wide profiling of yeast DNA:RNA hybrid prone sites with DRIP-chip. Yujia A Chan, Peter C Stirling, Maria J Aristizabal, Phoebe YT Lu, Zongli Luo, Akil Hamza, Michael S Kobor, Phil Hieter.
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-MTAB-1656.idf.txt
Sample and data relationshipE-MTAB-1656.sdrf.txt
Raw data (2)E-MTAB-1656.raw.1.zip, E-MTAB-1656.raw.2.zip
Processed data (1)E-MTAB-1656.processed.1.zip
Array designA-GEOD-6476.adf.txt
Links