E-MTAB-1655 - Transcription profiling by array of the potato (Solanum tuberosum L.) plant response to moderately elevated temperature

Status
Released on 1 August 2013, last updated on 3 June 2014
Organism
Solanum tuberosum
Samples (72)
Array (1)
Protocols (7)
Description
Although significant work has been undertaken regarding the response of model and crop plants to heat shock during the acclimatory phase, few studies have examined the steady state response to the mild heat stress encountered in temperate agriculture. In the present work we therefore exposed tuberising potato plants to mildly elevated temperatures (30/20C), day/night) for up to five weeks and compared tuber yield, physiological and biochemical responses, and leaf and tuber metabolomes and transcriptomes with plants grown under optimal conditions (22/16C). Growth at elevated temperature reduced tuber yield despite an increase in net foliar photosynthesis. This was associated with major shifts in leaf and tuber metabolite profiles, a significant decrease in leaf glutathione redox state and decreased starch synthesis in tubers. Furthermore, growth at elevated temperature had a profound impact on leaf and tuber transcript expression with large numbers of transcripts displaying a rhythmic oscillation at the higher growth temperature. RT-PCR revealed perturbation in the expression of circadian clock transcripts including StSP6A, previously identified as a tuberisation signal. Our data indicate that potato plants grown at moderately elevated temperatures do not exhibit classic symptoms of abiotic stress but that tuber development responds via a diversity of biochemical and molecular signals. In this submission we are looking at gene expression changes with respect to both temperature and time, every 4h over a 24h period whereby diurnal changes may be apparent.
Experiment types
transcription profiling by array, co-expression, growth condition design, stimulus or stress design, time series design
Contact
Citation
Physiological, biochemical and molecular responses of the potato (Solanum tuberosum L.) plant to moderately elevated temperature. Robert D. Hancock, Wayne L. Morris, Laurence J.D. Ducreux, Jenny A. Morris, Muhammad Usman, Susan R. Verrall, John Fuller, Craig G. Simpson, Runxuan Zhang, Pete E. Hedley, Mark A. Taylor.
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-MTAB-1655.idf.txt
Sample and data relationshipE-MTAB-1655.sdrf.txt
Raw data (2)E-MTAB-1655.raw.1.zip, E-MTAB-1655.raw.2.zip
Array designA-MEXP-2272.adf.txt
Links