E-MTAB-1622 - Transcription profiling by array of gills from Gulf killifish Fundulus grandis collected at three field sites over four time points before and after the arrival of contaminating crude oil spill

Status
Released on 18 April 2013, last updated on 3 May 2014
Organism
Fundulus grandis
Samples (50)
Array (1)
Protocols (7)
Description
In this study we characterize the gill transcriptome changes that coincide with the arrival of contaminating oil in field-collected Gulf killifish Fundulus grandis. Gill transcription was contrasted before and after the arrival of oil, and between oil impacted and reference sites. Animals were sampled from field sites at four times. The oil impacted site is Grand Terre Island Louisiana (GT) and the two reference sites are Bay St. Louis Mississippi (BSL) and Bayou La Batre Alabama (BLB). The first timepoint (05/01/2010 to 05/09/2010) was before the arrival of contaminating oil, the second and third timepoints (06/28/2010 to 06/29/2010, and 08/30/2010 to 09/01/2010) were after the arrival of contaminating oil, and the fourth timepoint 08/28/2011) was over a year after the arrival of contaminating oil.
Experiment types
transcription profiling by array, co-expression, dye swap, in vivo, loop, stimulus or stress, time series
Contact
Citation
Multi-tissue molecular, genomic, and developmental effects of the Deepwater Horizon oil spill on resident Gulf killifish (Fundulus grandis). Benjamin Dubansky, Andrew Whitehead, Jeffrey Miller, Charles D. Rice, Fernando Galvez.
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-MTAB-1622.idf.txt
Sample and data relationshipE-MTAB-1622.sdrf.txt
Processed data (1)E-MTAB-1622.processed.1.zip
Array designA-MEXP-1955.adf.txt
Links