E-MTAB-1610 - Transcription profiling by array of V. vinifera auto- and hetero-grafts to investigate gene expression changes during graft union formation

Status
Submitted on 1 January 2011, released on 9 April 2014, last updated on 5 June 2014
Organism
Vitis vinifera
Samples (36)
Array (1)
Protocols (8)
Description
Transcriptional changes occurring at the graft interface of auto- (Cabernet Sauvignon/ Cabernet Sauvignon) and hetero-grafted (Cabernet Sauvignon/ Riparia Gloire de Montpellier and Cabernet Sauvignon /1103 Paulsen) grapevine. Gene expression profiling was done using the Nimblegen whole genome array with 3 biological replicates of 15 pooled graft interfaces harvested 3, 7, 14 and 28 d after grafting.
Experiment types
transcription profiling by array, strain or line, time series design
Contact
Citation
Heterografting with nonself rootstocks induces genes involved in stress responses at the graft interface when compared with autografted controls. Cookson SJ, Clemente Moreno MJ, Hevin C, Nyamba Mendome LZ, Delrot S, Magnin N, Trossat-Magnin C, Ollat N. J Exp Bot 65(9):2473-2481 (2014), Europe PMC 24692649
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-MTAB-1610.idf.txt
Sample and data relationshipE-MTAB-1610.sdrf.txt
Raw data (2)E-MTAB-1610.raw.1.zip, E-MTAB-1610.raw.2.zip
Processed data (1)E-MTAB-1610.processed.1.zip
Array designA-MEXP-2309.adf.txt
Links