E-MTAB-1581 - RNA-seq of coding RNA from soilborne fungus Verticillium dahliae cultures which were or were not microsclerotia(MS)-producing

Status
Released on 6 September 2013, last updated on 2 January 2014
Organism
Verticillium dahliae
Samples (6)
Protocols (6)
Description
Verticillium dahliae is a soilborne fungus that causes wilt disease in plants. The microsclerotia of V. dahliae produce infectious hyphae that give rise to primary infections. In this study, RNA-seq libraries were prepared from microsclerotia (MS)-producing cultures of V. dahliae (ave = 52.23 million reads), and those not producing microsclerotia (NoMS, ave = 50.58 million reads) and analyzed for differential gene expression.
Experiment types
RNA-seq of coding RNA, co-expression, in vitro
Contact
Citation
RNA-seq analyses of gene expression in the microsclerotia of Verticillium dahliae. Duressa D, Anchieta A, Chen D, Klimes A, Garcia-Pedrajas MD, Dobinson KF, Klosterman SJ. BMC Genomics 14:607 (2013), Europe PMC 24015849
MINSEQE
Exp. designProtocolsFactorsProcessedSeq. reads
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