E-MTAB-1556 - RNA-seq of coding RNA from leaf samples to identify transcripts upregulated during vernalization in Lolium perenne plants

Status
Released on 18 April 2013, last updated on 3 May 2014
Organism
Lolium perenne
Samples (1)
Protocols (8)
Description
The aim of this experiment was to identify transcripts upregulated during vernalization in Lolium perenne plants. Illumina Genome Analyzer II RNA-Seq data was generated from leaf samples collected before vernalization, and after the start of cold treatment, at 2 days, 4 weeks and 9 weeks.
Experiment types
RNA-seq of coding RNA, co-expression, replicate design, time series design
Contacts
Citation
Shift from tropical to temperate habitat preference is associated with adaptive evolution of low temperature stress responses in Pooideae grasses. Magnus D. Vigeland, Manuel Spannagl, Torben Asp, Cristiana Paina, Heidi Rudi, Siri Fjellheim, Odd-Arne Rognli, Simen R. Sandve. New Phytologist  (2013)
MINSEQE
Exp. designProtocolsFactorsProcessedSeq. reads
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