E-MTAB-1551 - Transcription profiling by array of Fundulus heteroclitus and Fundulus majalis gill samples to track physiological and genome expression responses to hypo-osmotic (freshwater) challenge during a time-course of acclimation, and contrast these responses within and between species

Status
Released on 23 April 2013, last updated on 3 May 2014
Organism
Fundulus heteroclitus, Fundulus majalis
Samples (126)
Array (1)
Protocols (7)
Description
The goals of these studies are to explore the mechanisms that enable extreme physiological plasticity and that may account for evolutionary divergence of adaptive osmotic physiologies among taxa that occupy different osmotic niches. In a common-garden environment, we track physiological and genome expression responses to hypo-osmotic (freshwater) challenge during a time-course of acclimation, and contrast these responses within and between species. We seek to identify mechanisms that facilitate osmotic acclimation that are evolutionarily conserved between basal and derived physiologies, and identify mechanisms that are uniquely derived to enable the extreme osmotic plasticity exhibited by F. heteroclitus. Importantly, previous studies using a comparable experimental design have identified physiological changes and genome expression responses that are adaptive for populations of F. heteroclitus that live in fresh water. As such, this enables us to test whether mechanisms of adaptive micro-evolutionary divergence across osmotic gradients within F. heteroclitus are shared with the mechanisms that account for patterns of macro-evolutionary divergence between F. heteroclitus and F. majalis that we identify in this study. That is, are the targets of micro-evolutionary fine-tuning the same or different as the targets of macro-evolutionary divergence across osmotic boundaries? Population comparisons include between populations from Chesapeake Bay (CB), coastal Virginia (VA), and coastal Georgia (GA).
Experiment types
transcription profiling by array, dye swap design, in vivo, loop design, replicate design, species design, stimulus or stress design, time series design
Contact
Citation
Common functional targets of adaptive micro- and macro-evolutionary divergence in killifish. Andrew Whitehead, Shujun Zhang, Jennifer L. Roach, Fernando Galvez.
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-MTAB-1551.idf.txt
Sample and data relationshipE-MTAB-1551.sdrf.txt
Processed data (1)E-MTAB-1551.processed.1.zip
Array designA-MEXP-1965.adf.txt
Links