E-MTAB-1511 - ChIP-seq of human, chimpanzee, gorilla, orang-utan, macaque, baboon and marmoset using lymphoblastoid cell lines to investigate the evolutionary comparison of CTCF and YY1 binding

Status
Released on 20 November 2013, last updated on 3 May 2014
Organism
Gorilla gorilla gorilla, Homo sapiens, Macaca mulatta, Mus musculus, Pan troglodytes , Papio hamadryas, Pongo pygmaeus pygmaeus, Sanguinus oedipus
Samples (20)
Protocols (6)
Description
We performed an evolutionary comparison of the binding of the TF CTCF in human, chimpanzee, gorilla, orang-utan, macaque, baboon and marmoset using lymphoblastoid cell lines (LCLs). We also probes YY1 binding in human, chimpanzee, orang-utan and baboon LCLs as well as human and mouse liver.
Experiment types
ChIP-seq, ChiP-seq, in vitro, in vivo, replicate, species
Contact
Citation
Co-binding by YY1 identifies the transcriptionally active, highly conserved set of CTCF-bound regions in primate genomes. Schwalie PC, Ward MC, Cain CE, Faure AJ, Gilad Y, Odom DT, Flicek P. Genome Biology 14(12):R148 (2013), Europe PMC 24380390
MINSEQE
Exp. designProtocolsFactorsProcessedSeq. reads
Files
Investigation descriptionE-MTAB-1511.idf.txt
Sample and data relationshipE-MTAB-1511.sdrf.txt
Processed data (48)Click to browse processed data
Links