E-MTAB-1489 - Transcription profiling by array of fission yeast grown in EMM medium with or without caffeine and/or rapamycin to study the TORC1 signaling pathway

Status
Released on 5 May 2013, last updated on 8 May 2014
Organism
Schizosaccharomyces pombe
Samples (10)
Protocols (8)
Description
Target of rapamycin complex 1 (TORC1) is implicated in growth control and aging from yeast to humans. Fission yeast is emerging as a popular model organism to study TOR signaling, although rapamycin has been thought to not affect cell growth in this organism. Here we analyzed the effects of rapamycin and caffeine, singly and combined, on multiple cellular processes in fission yeast. The two drugs led to diverse and specific phenotypes that depended on TORC1 signaling pathway inhibition, including prolonged chronological lifespan, inhibition of global translation, inhibition of cell growth and division, and reprogramming of global gene expression mimicking nitrogen starvation. Rapamycin and caffeine differentially affected these various TORC1-dependent processes. Combined drug treatment augmented most phenotypes and effectively blocked cell growth. Although rapamycin showed a much more subtle effect on global translation than did caffeine, rapamycin was more effective in prolonging chronological lifespan. Rapamycin prolonged the lifespan of non-growing cells only when applied during the growth phase but not when applied after cells had stopped proliferation. The doses of rapamycin and caffeine strongly correlated with growth inhibition and with lifespan extension. This comprehensive analysis will inform future studies into TORC1 function and cellular aging in fission yeast and beyond.
Experiment types
transcription profiling by array, co-expression, replicate
Contacts
Citation
TORC1 pathway inhibition by rapamycin and caffeine affect lifespan, global gene expression and cell proliferation of fission yeast. Charalampos Rallis, Sandra Codlin and Jurg Bahler.
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-MTAB-1489.idf.txt
Sample and data relationshipE-MTAB-1489.sdrf.txt
Raw data (1)E-MTAB-1489.raw.1.zip
Links