E-MTAB-1389 - Transcription profiling by array of 178 human breast cancer biopsy samples vs normal breast reference total RNA (Clontech) to identify exons associated with higher risk of relapse

Status
Released on 7 May 2013, last updated on 3 May 2014
Organism
Homo sapiens
Samples (178)
Array (1)
Protocols (6)
Description
We profiled breast cancer samples with exon arrays (244K Agilent Human exon) in order to identify exons associated with higher risk of relapse. This set contain 178 single dual color of samples (biopsies) versus normal breast reference (Normal breast Clontech) , 5 dye-swap (10 hybridizations) and 5 self self for controls.
Experiment types
transcription profiling by array, disease state
Contact
Citation
ATIP3, a Novel Prognostic Marker of Breast Cancer Patient Survival, Limits Cancer Cell Migration and Slows Metastatic Progression by Regulating Microtubule Dynamics. Angie Molina; Lauriane Velot; Lydia Ghouinem; Mohamed Abdelkarim; Benjamin Pierre Bouchet; Anny-Claude Luissint; Imene Bouhlel; Marina Morel; Elene Sapharikas; Anne Di Tommaso; Stephane Honore; Diane Braguer; Nadege Gruel; Anne Vincent-Salomon; Olivier Delattre; Brigitte Sigal-Zafrani; Fabrice Andre; Benoit Terris; Anna Akhmanova; Melanie Di Benedetto; Clara Nahmias; Sylvie Rodrigues-Ferreira. Cancer Res 73(9):2905 (2013), Europe PMC 23396587
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-MTAB-1389.idf.txt
Sample and data relationshipE-MTAB-1389.sdrf.txt
Raw data (25)Click to browse raw data
Array designA-MEXP-2223.adf.txt
Links