E-MTAB-1362 - Transcription profiling by array of Arabidopsis thaliana wild type and time for coffee mutant (tic-2) at dawn to investigate the role of TIC in the morning perception process

Status
Released on 10 October 2013, last updated on 3 May 2014
Organism
Arabidopsis thaliana
Samples (4)
Array (1)
Protocols (6)
Description
To investigate the role of TIC in the morning perception process, we performed a transcriptome analysis of the wild type and time for coffee mutant (tic-2) at dawn. An additional file is included. In this file, the expression values for the replicates are condensed in a single data point obtaining one mean and standard deviation of the expression values per genotype. The protocol for this file is: log2 fold change followed by a False Discovery Rate with a p-value equal or below 0.05.
Experiment types
transcription profiling by array, co-expression, individual genetic characteristics, replicate
Contact
Citation
TIME FOR COFFEE is an essential component in the maintenance of metabolic homeostasis in Arabidopsis thaliana. Alfredo Sanchez-Villarreal, Jieun Shin, Nora Bujdoso, Toshihiro Obata, Ulla Neumann, Shen-Xiu Du, Zhaojun Ding, Amanda M. Davis, Takayuki Shindo, Elmon Schmelzer, Ronan Sulpice, Adriano Nunes-Nesi, Mark Stitt, Alisdair R. Fernie and Seth J. Davis. Plant J 76:188-200 (2013), Europe PMC 23869666
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-MTAB-1362.idf.txt
Sample and data relationshipE-MTAB-1362.sdrf.txt
Raw data (1)E-MTAB-1362.raw.1.zip
Processed data (1)E-MTAB-1362.processed.1.zip
Array designA-AFFY-2.adf.txt
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