E-MTAB-1340 - RNA-seq of 6 cultivated carrot (Daucus carota L. ssp. sativus) strains and 5 populations of wild carrot (Daucus carota L. ssp. Carota) to compare their root transcriptomes

Status
Released on 24 October 2013, last updated on 13 October 2014
Organism
Daucus carota
Samples (11)
Protocols (5)
Description
Cultivated carrot (Daucus carota L. ssp. sativus) was domesticated from wild carrot (Daucus carota L. ssp. carota) with radical different traits. The aim of this study was to compare the root transcriptomes between cultivated and wild carrots for SNP discovery, inferring domestication process, and identifying domestication genes. Six cultivated carrots representing main European carrot root types and five wild carrot populations from widely dispersed sites were used. The root transcriptomes were sequenced with multiplexing paried-end sequencing in Illumina Genome Analyzer IIx.
Experiment types
RNA-seq of coding RNA, co-expression, in vivo
Contact
Citations
New insights into domestication of carrot from root transcriptome analyses. Rong J, Lammers Y, Strasburg JL, Schidlo NS, Ariyurek Y, de Jong TJ, Klinkhamer PG, Smulders MJ, Vrieling K. :895 (2014), Europe PMC 25311557
New insights into domestication of carrot from root transcriptome analyses. Jun Rong, Youri Lammers, Jared L. Strasburg, Natasha S. Schidlo, Yavuz Ariyurek, Tom J. de Jong, Peter G. L. Klinkhamer, Marinus J. M. Smulders and Klaas Vrieling. BMC Genomics  (2014)
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-MTAB-1340.idf.txt
Sample and data relationshipE-MTAB-1340.sdrf.txt
Links