E-MTAB-1324 - Transcription profiling by array of fission yeast (Schizosaccharomyces pombe) to study the effects of upf1-delta on RNA stability

Status
Released on 3 June 2013, last updated on 5 June 2014
Organism
Schizosaccharomyces pombe
Samples (4)
Array (1)
Protocols (8)
Description
The Upf1 protein is a major factor in nonsense-mediated decay. We used an in vivo labelling system (Cleary et al. 2005 Nat Biotechnol. 23, 232-7) to estimate the decay rates of upf1delta and wild type cells over-expressing the transcription factor Mei4.
Experiment types
transcription profiling by array, cell type comparison, dye swap
Contact
Citation
Functional characterization of Upf1 targets in Schizosaccharomyces pombe. Matia-Gonzalez AM, Hasan A, Moe GH, Mata J, Rodriguez-Gabriel MA. RNA Biol 10(6):1057-1065 (2013), Europe PMC 23619768
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-MTAB-1324.idf.txt
Sample and data relationshipE-MTAB-1324.sdrf.txt
Raw data (1)E-MTAB-1324.raw.1.zip
Processed data (1)E-MTAB-1324.processed.1.zip
Array designA-MEXP-2049.adf.txt
Links