E-MTAB-1316 - Transcription profiling by tiling array of Saccharomyces cerevisiae cells lacking Rrp6 alone or combined with loss of the HMT Set1 or the HDACs Hda1 and Rpd3

Status
Last updated on 12 December 2012, released on 1 March 2013
Organism
Saccharomyces cerevisiae
Samples (24)
Array (1)
Protocols (5)
Description
Whole transcriptome analyses of various histone modification mutants in a Drrp6 strain using high-density tiling arrays. To assess the importance of histone modifications in antisense-mediated repression genome-wide, we performed high-density tiling arrays on cells lacking Rrp6 alone or combined with loss of the HMT Set1 or the HDACs Hda1 and Rpd3. Expression profiles are also provided in a searchable web-database: http://steinmetzlab.embl.de//cgi- bin/viewStutzLabArray.pl?showSamples=stutzLabArray&type=heatmap&gene=rrp6. Normalized file, created using protocol P-MTAB-27905, provided as an additional archive.
Experiment types
transcription profiling by tiling array, co-expression, genetic modification
Contact
Citation
Role of histone modifications in pervasive transcription and antisense-mediated silencing in yeast. Zaugg, J.B., Castelnuovo, M, Guffanti, E, Camblong, J., Xu, Z., Clauder, S., Luscombe, N.M., Steinmetz, L.M. and Stutz, F.
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-MTAB-1316.idf.txt
Sample and data relationshipE-MTAB-1316.sdrf.txt
Raw data (3)E-MTAB-1316.raw.1.zip, E-MTAB-1316.raw.2.zip, E-MTAB-1316.raw.3.zip
Array designA-AFFY-116.adf.txt
Links