E-MTAB-1275 - Methylation profiling of glioblastoma neural stem cells and reprogrammed derivatives

Status
Released on 15 March 2013, last updated on 3 May 2014
Organism
Homo sapiens
Samples (18)
Array (1)
Protocols (7)
Description
Glioblastoma-derived neural stem (GNS) cells were reprogrammed to induced pluripotent stem (iPS) cells by transgenic expression of OCT4 and KLF4. Genome-wide DNA methylation status was profiled at 27,578 CpG sites to assess epigenetic erasure and restoration due to reprogramming and redifferentiation to the neural stem (NS) cell state.
Experiment types
methylation profiling by array, disease state, replicate
Contact
Citation
Widespread resetting of DNA methylation in glioblastoma-initiating cells suppresses malignant cellular behavior in a lineage-dependent manner. Stefan H. Stricker, Andrew Feber, Par G. Engstrom, Helena Caren, Kathreena M. Kurian, Yasuhiro Takashima, Colin Watts, Michael Way, Peter Dirks, Paul Bertone, Austin Smith, Stephan Beck, Steven M. Pollard. Genes Dev. 27(6):654-69 (2013), Europe PMC 23512659
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-MTAB-1275.idf.txt
Sample and data relationshipE-MTAB-1275.sdrf.txt
Raw data (1)E-MTAB-1275.raw.1.zip
Array designA-GEOD-8490.adf.txt
Links