E-MIMR-644 - Transcription profiling of human chondrocytes from patients with osteosarcoma or osteomyelitis, cultured in either 1% or 20% oxygen for one or four days

Status
Released on 1 April 2008, last updated on 3 May 2014
Organism
Homo sapiens
Samples (8)
Array (1)
Protocols (54)
Description
Cartilage was taken from the femoral condyle and tibial plateau from eight patients, cut into small pieces and digested overnight with Collagenase Type 2. The resultant chondrocytes were put through a cell strainer, pelleted and resuspended in fresh media and cultured for one week in 20% oxygen. The culture was split into five sub-cultures, one of which was immediately frozen; the remainder were allowed to recover overnight. Cells were subsequently grown at either 1% oxygen (hypoxia simulation) or 20% oxygen (normoxia simulation) for either one or four days before RNA extraction. Labelled RNA was then hybridised to Affymetrix Human U133 plus 2.0 arrays.
Experiment types
transcription profiling by array, growth condition, time series
Contacts
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-MIMR-644.idf.txt
Sample and data relationshipE-MIMR-644.sdrf.txt
Array designA-AFFY-44.adf.txt
Links