E-MEXP-852 - Transcription profiling of Arabidopsis wild type and Bellringer over-expressing seedlings

Status
Submitted on 6 September 2006, released on 1 October 2008, last updated on 2 May 2014
Organism
Arabidopsis thaliana
Samples (6)
Array (1)
Protocols (7)
Description
Comparing gene expression in a Bellringer overexpressor vs wild-type Col-0. 3 biological sample replicates were used for microarray analyses.

In order to control against dye bias and dye specific artifacts the replicate arrays had a "dye swop" design:

Array 1: cy5 Col-0 a; cy5 BLR-OX_Van a
Array 2: cy5 BLR-OX_Van b; cy5 Col-0 b
Array 3: cy5 Col-0 c; cy5 BLR-OX_Van c
Experiment types
transcription profiling by array, genetic modification
Contact
Citation
A role for BELLRINGER in cell wall development is supported by loss-of-function phenotypes. Etchells JP, Moore L, Jiang WZ, Prescott H, Capper R, Saunders NJ, Bhatt AM, Dickinson HG. BMC Plant Biol 12:212 (2012), Europe PMC 23148846
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-MEXP-852.idf.txt
Sample and data relationshipE-MEXP-852.sdrf.txt
Raw data (1)E-MEXP-852.raw.1.zip
Array designA-MEXP-555.adf.txt
R ExpressionSetE-MEXP-852.eSet.r
Links