E-MEXP-635 - Transcription profiling of Arabidopsis roots of wild type, brx loss-of-function and rescued brx lines

Status
Released on 28 September 2006, last updated on 2 May 2014
Organism
Arabidopsis thaliana
Samples (3)
Array (1)
Protocols (5)
Description
We compared the root transcription profiles to determine the effects of loss-of-function of the BRX gene of Arabidopsis. BRX is required for optimal root growth. We compared roots of a loss-of-function line (brx) with its control background (Sav-0). Because the loss-of-function line was derived from introgression, a brx line that was complemented by a transgenic wild type copy of BRX was also included as a control. This line (rescued brx) allows the identification of expression differences that are due to introgression drag. See Mouchel et al. 2004, Genes & Dev. Vol. 18, p. 700 for a detailed description.
Experiment types
transcription profiling by array, strain or line
Contacts
Christian Hardtke <christian.hardtke@unil.ch>, Céline F Mouchel, Karen S Osmont
Citation
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-MEXP-635.idf.txt
Sample and data relationshipE-MEXP-635.sdrf.txt
Raw data (1)E-MEXP-635.raw.1.zip
Array designA-AFFY-2.adf.txt
R ExpressionSetE-MEXP-635.eSet.r
Links