E-MEXP-622 - Transcription profiling of rainbow trout liver in response to standardized handling stress

Status
Released on 31 January 2006, submitted on 26 March 2006, last updated on 2 May 2014
Organism
Oncorhynchus mykiss
Samples (9)
Array (1)
Protocols (8)
Description
We constructed a targeted cDNA microarray consisting of 147 rainbow trout (Oncorhynchus mykiss) genes with known function to examine the transcriptional response to a standardized handling stress.
Experiment types
transcription profiling by array, physiological process, stimulus or stress, time series
Contacts
Steve Wiseman <stevewiseman@yahoo.com>, erin Bassett, Graham VanAggelen, Heather Osachoff, Jana Malhotra, Joy Bruno, Mathilakath M Vijayan, Thomas P Mommsen
Citations
Transcriptional response to acute stress in rainbow trout liver involves upregulation of genes involved in glucose metabolism. Steve Wiseman; Heather Osachoff; erin Bassett; Jana Malhotra; Joy Bruno; Graham VanAggelen; Thomas Mommsen; Mathilakath Vijayan. Am J Physiol 
Genetic Diversity among Escherichia coli O157:H7 Isolates and Identification of Genes Linked to Human Infections. Wu, Guanghui; Carter, Ben; Mafura, Muriel; Liebana, Ernesto; Woodward, Martin J.; Anjum, Muna F. Infect Immun 76(2):845 (2008), Europe PMC 18070900
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-MEXP-622.idf.txt
Sample and data relationshipE-MEXP-622.sdrf.txt
Raw data (1)E-MEXP-622.raw.1.zip
Array designA-MEXP-309.adf.txt
R ExpressionSetE-MEXP-622.eSet.r
Links