6 protocols
AccessionNameType
P-AFFY-6
feature_extraction
Title: Affymetrix CEL analysis. Description:
Affymetrix:Protocol:Hybridization-Unknown
hybridization
Title: Affymetrix Generic Hybridization. Description:
P-AFFY-2
labeling
Title: Affymetrix in vitro transcription. Description:
Affymetrix:Protocol:MAS4:ExpressionCall
bioassay_data_transformation
Title: Affymetrix CHP Analysis (ExpressionCall). Description:
P-MTAB-22681
nucleic_acid_extraction
Total RNA including miRNA is extracted using qiagen miRNEasy mini Kit (Cat No. 217004) according to manufacturer's protocols. RNA quality was assessed by using the Agilent 2100 bioanalyzer and only samples with RNA integrity number >8 were used.
(Parameters: Extracted product = total_RNA, Amplification = none)
P-MTAB-22680
specified_biomaterial_action
miR-21 wildtype or miR-21 deficient bone marrow derived progenitor cells were treated with 100 ng/mL stem cell factor and 100 ng/mL FLT-3 ligand from day 0 to day 4. On day 4, stem cell factor and FLT-3 ligand were replaced with 10 ng/mL IL-5 and the cells were cultured for an additional 10 days.