E-MEXP-260 - Transcription profiling of Capsicum fruit ripening process

Status
Submitted on 2 February 2005, released on 1 March 2005, last updated on 2 May 2014
Organism
Capsicum annuum, Lycopersicon esculentum
Samples (19)
Array (1)
Protocols (18)
Description
Pepper fruits at four different developmental stages were collected: early fruit [EF; 1 cm long; 7 days after pollination (dap)], mature green fruit (MG; 6-7 cm length; 20 dap), breaking or turning red fruit (BR; fruit are partially red; 35 dap), and red ripe fruit (RR; fully red; 40 dap). Tomato fruits at corresponding developmental stages were also collected: EF (less than 1cm; 7 dap), MG (40 dap), BR (50 dap), and RR (55 dap). For the monitoring of fruit-specific and fruit ripening-related genes, we did array hybridization by using the leaves as a common reference and each corresponding fruit developmental stage sample.
Experiment types
transcription profiling by array, development or differentiation, reference
Contacts
Sanghyeob Lee <sol6793@kribb.re.kr>, Cheol-Goo Hur, Doil Choi, Eun-Joo Chung, Sang-Jin Byun, Yoonhee Shin
Citation
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-MEXP-260.idf.txt
Sample and data relationshipE-MEXP-260.sdrf.txt
Raw data (1)E-MEXP-260.raw.1.zip
Array designA-MEXP-150.adf.txt
R ExpressionSetE-MEXP-260.eSet.r
Links