E-MEXP-2273 - Chromatin immunoprecipitation in dot1 deletion and G1 or G2 arrested yeast cells to identify methylation patterns

Status
Released on 19 October 2009, last updated on 2 May 2014
Organism
Saccharomyces cerevisiae
Samples (9)
Array (1)
Protocols (6)
Description
To define the molecular regulators required for differential pattern of H3K79 methylation by Dot1, we performed a GPS screen and discovered that the components of the cell cycle-regulated SBF complex were required for normal levels of H3K79 di- but not trimethylation. Genome-wide mapping revealed that H3K79 di- and trimethylation to present a mutually exclusive pattern on chromatin with M/G1 cell-cycle-regulated genes significantly enriched for H3K79 dimethylation. Since H3K79 trimethylation requires prior monoubiquitination of H2B, we performed genome-wide profiling of H2BK123 monoubiquitination and showed that H2BK123 monoubiquitination is excluded from cell cycle regulated genes and sites containing H3K79me2 but not from H3K79me3 containing regions. A genome-wide screen for factors responsible for the establishment/removal of H3K79 dimethylation resulted in the identification of several genes including NRM1 and WHI3, which both impact the transcription by the SBF, and MBF complexes, further linking the regulation of H3K79's methylation status to the cell cycle.
Experiment types
ChIP-chip by array, binding site identification, cell cycle, in vivo
Contact
Citation
Linking cell cycle to histone modifications: SBF and H2B monoubiquitination machinery and cell cycle regulation of H3K79 dimethylation.
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-MEXP-2273.idf.txt
Sample and data relationshipE-MEXP-2273.sdrf.txt
Raw data (2)E-MEXP-2273.raw.1.zip, E-MEXP-2273.raw.2.zip
Processed data (2)E-MEXP-2273.processed.1.zip, E-MEXP-2273.processed.2.zip
Array designA-AFFY-42.adf.txt
R ExpressionSetE-MEXP-2273.eSet.r
Links