E-MEXP-1671 - Strain abundance assay of barcoded DAmP loss of function S. cerevisiae strains exposed to various compounds

Status
Released on 3 July 2008, last updated on 12 October 2011
Organism
Saccharomyces cerevisiae
Samples (40)
Array (1)
Protocols (8)
Description
The ability to perform complex bioassays in parallel enables experiments otherwise impossible due to throughput and cost constraints. By way of example, highly parallel chemical-genetic screens using pooled collections of thousands of defined Saccharomyces cerevisiae gene deletion strains are feasible because each strain is barcoded with unique DNA sequences. It is, however, time consuming and expensive to individually barcode individual strains. To provide a simple and general method of barcoding yeast collections, we built a set of donor strains, called Barcoders, with unique barcodes that can be systematically transferred to any S. cerevisiae collection. We applied this technology by generating a collection of barcoded DAmP (Decreased Abundance by mRNA Perturbation) loss-of-function strains comprising 87.1% of all essential yeast genes. This test collection validates both the Barcoders and the DAmP collection as useful tools for genome-wide chemical genetic assays.
Experiment types
RNAi profiling by array, compound treatment, growth condition, in vivo, strain abundance, strain or line
Contact
Citation
Yeast Barcoders: A chemogenomic application of a universal donor strain collection carrying barcode identifiers.
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-MEXP-1671.idf.txt
Sample and data relationshipE-MEXP-1671.sdrf.txt
Raw data (1)E-MEXP-1671.raw.1.zip
Array designA-AFFY-118.adf.txt
Links