E-MEXP-1181 - Comparative genomic hybridization of zebra finch and common whitethroat samples using a Affymetrix custom array designed for the zebra finch

Status
Submitted on 18 July 2007, released on 30 September 2007, last updated on 10 June 2011
Organism
Sylvia communis, Taeniopygia guttata
Samples (2)
Array (1)
Protocols (7)
Description
We have conducted a Cross-Species Microarray analysis by hybridizing genomic DNA from the common whitethroat (Sylivia communis) on a newly developed Affymetrix costum array designed for the zebra finch (Taeniopygia guttata), the Lund-zf array. We have also quality tested the Lund-zf array by hybridizing zebra finch genomic DNA to the platform.
Experiment types
comparative genomic hybridization by array, comparative genome hybridization, quality control testing, species
Contact
Citation
A microarray for large scale genomic and transcriptional analyses of the zebra finch (Taenopygia guttata) and other passerines. Sara Naurin, Staffan Bensch, Bengt Hansson, Tomas Johansson, David F. Clayton, Ann-Sofie Albrekt, Torbjörn von Schantz, Dennis Hasselquist. Mol Ecol Notes 
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-MEXP-1181.idf.txt
Sample and data relationshipE-MEXP-1181.sdrf.txt
Raw data (1)E-MEXP-1181.raw.1.zip
Array designA-AFFY-89.adf.txt
R ExpressionSetE-MEXP-1181.eSet.r
Links