E-MEXP-1168 - Transcription profiling of human MALT lymphoma and chronic gastritis tissue from the same patients

Status
Submitted on 6 July 2007, released on 24 July 2007, last updated on 2 May 2014
Organism
Homo sapiens
Samples (42)
Array (1)
Protocols (6)
Description
21 Tissue samples of gastric MALT lymphoma were compared by cDNA microarray studies with chronic gastritis tissues from the same patient. From each patient, multiple mucosal biopsies of the stomach were taken both from i) the macroscopically infiltrated area and ii) distant from the lymphoma. For conventional histological examination, biopsies taken from the same areas were formalin fixed, embedded in paraffin and reviewed by a central pathologist. All lymphoma samples were tested by RT-PCR for t(11;18). None of them was t(11;18) positive.
Experiment types
transcription profiling by array, all pairs, co-expression, disease state, dye swap, ex vivo
Contact
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-MEXP-1168.idf.txt
Sample and data relationshipE-MEXP-1168.sdrf.txt
Raw data (1)E-MEXP-1168.raw.1.zip
Array designA-MEXP-111.adf.txt
R ExpressionSetE-MEXP-1168.eSet.r
Links