E-MARS-17 - Transcription profiling of E. coli HMS174(DE3)(pET30aNproGFPmut3.1) to analyze cellular response to limited induction with IPTG

Status
Released on 26 March 2010, last updated on 12 October 2011
Organism
Escherichia coli
Samples (24)
Array (1)
Protocols (6)
Description
This transcription profiling time course experiment was conducted in order to analyze the cellular response of the T7 RNA polymerase based E. coli expression system HMS174(DE3)(pET30aNproGFP) to a limited induction with isopropyl-beta-D-galactoside (IPTG). The used cell material was produced under well controlled and defined conditions in an exponential carbon limited fed-batch cultivation at a growth rate of 0.1 per hour. One doubling past feed start induction was started by continuously feeding limiting amounts of inducer gaining in a constant IPTG to cell dry weight ratio of 1µmol/g. Due to the low induction level a physiologically tolerable recombinant gene expression rate was generated and production period was significantly elongated. Non induced cells sampled at the time point of induction were used as reference and compared to cells subsequently sampled during the production period (sampling frequency 2 hours).
Experiment types
transcription profiling by array, time series
Contacts
Citations
Interactive visualization of clusters in microarray data: an efficient tool for improved metabolic analysis of E. coli. Scharl T, Striedner G, Pötschacher F, Leisch F, Bayer K. Microb Cell Fact 8:37 (2009), Europe PMC 19604371
Exploratory and inferential analysis of gene cluster neighborhood graphs. Scharl T, Voglhuber I, Leisch F. BMC Bioinformatics 10:288 (2009), Europe PMC 19751523
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-MARS-17.idf.txt
Sample and data relationshipE-MARS-17.sdrf.txt
Raw data (1)E-MARS-17.raw.1.zip
Array designA-MARS-10.adf.txt
Links