ArrayExpress

E-GEUV-3 - RNA-sequencing and small RNA-sequencing of 465 lymphoblastoid cell lines from the 1000 Genomes

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Source Name HG00096 HG00096 HG00096 HG00097 HG00097 HG00097 HG00099 HG00099 HG00099 HG00099 HG00099 HG00100 HG00100 HG00100 HG00101 HG00101 HG00101 HG00102 HG00102 HG00102 HG00103 HG00103 HG00104 HG00104 HG00104	Comment[ENA_SAMPLE] Characteristics[Organism] Term Source REF Term Accession Number Characteristics[Strain] Characteristics[population] Comment[1000g Phase1 Genotypes] Comment[Quality Control passed] Comment[Notes] Protocol REF Protocol REF Extract Name Comment[LIBRARY_SELECTION] Comment[LIBRARY_SOURCE] Comment[SEQUENCE_LENGTH] Comment[LIBRARY_STRATEGY] Comment[LIBRARY_LAYOUT] Comment[NOMINAL_LENGTH] Comment[NOMINAL_SDEV] Protocol REF Protocol REF Performer Assay Name Technology Type Comment[ENA_EXPERIMENT] Scan Name Comment[SUBMITTED_FILE_NAME] Comment[ENA_RUN] Comment[FASTQ_URI] Comment[SPOT_LENGTH] Comment[READ_INDEX_1_BASE_COORD] Protocol REF Comment [Derived ArrayExpress FTP file] Factor Value[population] Factor Value[laboratory] ERS185276 Homo sapiens NCBI Taxonomy 9606 lymphoblastoid cell line GBR 1 1 P-GEUV-1 P-GEUV-2 HG00096.1.M_111124_6 extract cDNA TRANSCRIPTOMIC 75 RNA-Seq PAIRED 280 0 P-GEUV-5 P-GEUV-6 UNIGE HG00096.1.M_111124_6 high_throughput_sequencing ERX163134 HG00096.1.M_111124_6_1.fastq.gz HG00096.1.M_111124_6_1.fastq.gz ERR188040 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188040/ERR188040_1.fastq.gz 75 76 P-GEUV-7 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEUV/E-GEUV-1/HG00096.1.M_111124_6.bam GBR 1 ERS185276 Homo sapiens NCBI Taxonomy 9606 lymphoblastoid cell line GBR 1 1 P-GEUV-1 P-GEUV-2 HG00096.1.M_111124_6 extract cDNA TRANSCRIPTOMIC 75 RNA-Seq PAIRED 280 0 P-GEUV-5 P-GEUV-6 UNIGE HG00096.1.M_111124_6 high_throughput_sequencing ERX163134 HG00096.1.M_111124_6_2.fastq.gz HG00096.1.M_111124_6_2.fastq.gz ERR188040 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188040/ERR188040_2.fastq.gz 75 76 P-GEUV-7 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEUV/E-GEUV-1/HG00096.1.M_111124_6.bam GBR 1 ERS185276 Homo sapiens NCBI Taxonomy 9606 lymphoblastoid cell line GBR 1 1 P-GEUV-1 P-GEUV-2 HG00096.1.MI_120104_4 extract cDNA TRANSCRIPTOMIC 36 OTHER SINGLE P-GEUV-3 P-GEUV-4 UNIGE HG00096.1.MI_120104_4 high_throughput_sequencing ERX162432 HG00096.1.MI_120104_4_1.fastq.gz HG00096.1.MI_120104_4_1.fastq.gz ERR187525 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR187/ERR187525/ERR187525.fastq.gz GBR 1 ERS185206 Homo sapiens NCBI Taxonomy 9606 lymphoblastoid cell line GBR 1 1 P-GEUV-1 P-GEUV-2 HG00097.7.M_120219_2 extract cDNA TRANSCRIPTOMIC 75 RNA-Seq PAIRED 280 0 P-GEUV-5 P-GEUV-6 LUMC HG00097.7.M_120219_2 high_throughput_sequencing ERX162845 HG00097.7.M_120219_2_1.fastq.gz HG00097.7.M_120219_2_1.fastq.gz ERR188231 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188231/ERR188231_1.fastq.gz 75 76 P-GEUV-7 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEUV/E-GEUV-1/HG00097.7.M_120219_2.bam GBR 7 ERS185206 Homo sapiens NCBI Taxonomy 9606 lymphoblastoid cell line GBR 1 1 P-GEUV-1 P-GEUV-2 HG00097.7.M_120219_2 extract cDNA TRANSCRIPTOMIC 75 RNA-Seq PAIRED 280 0 P-GEUV-5 P-GEUV-6 LUMC HG00097.7.M_120219_2 high_throughput_sequencing ERX162845 HG00097.7.M_120219_2_2.fastq.gz HG00097.7.M_120219_2_2.fastq.gz ERR188231 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188231/ERR188231_2.fastq.gz 75 76 P-GEUV-7 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEUV/E-GEUV-1/HG00097.7.M_120219_2.bam GBR 7 ERS185206 Homo sapiens NCBI Taxonomy 9606 lymphoblastoid cell line GBR 1 1 P-GEUV-1 P-GEUV-2 HG00097.7.MI_120224_2 extract cDNA TRANSCRIPTOMIC 36 OTHER SINGLE P-GEUV-3 P-GEUV-4 LUMC HG00097.7.MI_120224_2 high_throughput_sequencing ERX162362 HG00097.7.MI_120224_2_1.fastq.gz HG00097.7.MI_120224_2_1.fastq.gz ERR187844 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR187/ERR187844/ERR187844.fastq.gz GBR 7 ERS185128 Homo sapiens NCBI Taxonomy 9606 lymphoblastoid cell line GBR 1 1 P-GEUV-1 P-GEUV-2 HG00099.5.M_120131_3 extract cDNA TRANSCRIPTOMIC 75 RNA-Seq PAIRED 280 0 P-GEUV-5 P-GEUV-6 HMGU HG00099.5.M_120131_3 high_throughput_sequencing ERX162743 HG00099.5.M_120131_3_1.fastq.gz HG00099.5.M_120131_3_1.fastq.gz ERR188428 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188428/ERR188428_1.fastq.gz 75 76 P-GEUV-7 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEUV/E-GEUV-1/HG00099.5.M_120131_3.bam GBR 5 ERS185128 Homo sapiens NCBI Taxonomy 9606 lymphoblastoid cell line GBR 1 1 P-GEUV-1 P-GEUV-2 HG00099.5.M_120131_3 extract cDNA TRANSCRIPTOMIC 75 RNA-Seq PAIRED 280 0 P-GEUV-5 P-GEUV-6 HMGU HG00099.5.M_120131_3 high_throughput_sequencing ERX162743 HG00099.5.M_120131_3_2.fastq.gz HG00099.5.M_120131_3_2.fastq.gz ERR188428 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188428/ERR188428_2.fastq.gz 75 76 P-GEUV-7 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEUV/E-GEUV-1/HG00099.5.M_120131_3.bam GBR 5 ERS185128 Homo sapiens NCBI Taxonomy 9606 lymphoblastoid cell line GBR 1 1 Replicate_from_another_lab P-GEUV-1 P-GEUV-2 HG00099.1.M_120209_6 extract cDNA TRANSCRIPTOMIC 75 RNA-Seq PAIRED 280 0 P-GEUV-5 P-GEUV-6 UNIGE HG00099.1.M_120209_6 high_throughput_sequencing ERX179647 HG00099.1.M_120209_6_1.fastq.gz HG00099.1.M_120209_6_1.fastq.gz ERR204882 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204882/ERR204882_1.fastq.gz 75 76 P-GEUV-7 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEUV/E-GEUV-3/HG00099.1.M_120209_6.bam GBR 1 ERS185128 Homo sapiens NCBI Taxonomy 9606 lymphoblastoid cell line GBR 1 1 Replicate_from_another_lab P-GEUV-1 P-GEUV-2 HG00099.1.M_120209_6 extract cDNA TRANSCRIPTOMIC 75 RNA-Seq PAIRED 280 0 P-GEUV-5 P-GEUV-6 UNIGE HG00099.1.M_120209_6 high_throughput_sequencing ERX179647 HG00099.1.M_120209_6_2.fastq.gz HG00099.1.M_120209_6_2.fastq.gz ERR204882 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204882/ERR204882_2.fastq.gz 75 76 P-GEUV-7 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEUV/E-GEUV-3/HG00099.1.M_120209_6.bam GBR 1 ERS185128 Homo sapiens NCBI Taxonomy 9606 lymphoblastoid cell line GBR 1 1 P-GEUV-1 P-GEUV-2 HG00099.5.MI_120327_3 extract cDNA TRANSCRIPTOMIC 36 OTHER SINGLE P-GEUV-3 P-GEUV-4 HMGU HG00099.5.MI_120327_3 high_throughput_sequencing ERX162284 HG00099.5.MI_120327_3_1.fastq.gz HG00099.5.MI_120327_3_1.fastq.gz ERR187595 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR187/ERR187595/ERR187595.fastq.gz GBR 5 ERS185086 Homo sapiens NCBI Taxonomy 9606 lymphoblastoid cell line GBR 1 1 P-GEUV-1 P-GEUV-2 HG00100.2.M_111215_8 extract cDNA TRANSCRIPTOMIC 75 RNA-Seq PAIRED 280 0 P-GEUV-5 P-GEUV-6 CNAG_CRG HG00100.2.M_111215_8 high_throughput_sequencing ERX163115 HG00100.2.M_111215_8_1.fastq.gz HG00100.2.M_111215_8_1.fastq.gz ERR188206 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188206/ERR188206_1.fastq.gz 75 76 P-GEUV-7 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEUV/E-GEUV-1/HG00100.2.M_111215_8.bam GBR 2 ERS185086 Homo sapiens NCBI Taxonomy 9606 lymphoblastoid cell line GBR 1 1 P-GEUV-1 P-GEUV-2 HG00100.2.M_111215_8 extract cDNA TRANSCRIPTOMIC 75 RNA-Seq PAIRED 280 0 P-GEUV-5 P-GEUV-6 CNAG_CRG HG00100.2.M_111215_8 high_throughput_sequencing ERX163115 HG00100.2.M_111215_8_2.fastq.gz HG00100.2.M_111215_8_2.fastq.gz ERR188206 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188206/ERR188206_2.fastq.gz 75 76 P-GEUV-7 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEUV/E-GEUV-1/HG00100.2.M_111215_8.bam GBR 2 ERS185086 Homo sapiens NCBI Taxonomy 9606 lymphoblastoid cell line GBR 1 1 P-GEUV-1 P-GEUV-2 HG00100.2.MI_120126_4 extract cDNA TRANSCRIPTOMIC 36 OTHER SINGLE P-GEUV-3 P-GEUV-4 CNAG_CRG HG00100.2.MI_120126_4 high_throughput_sequencing ERX162242 HG00100.2.MI_120126_4_1.fastq.gz HG00100.2.MI_120126_4_1.fastq.gz ERR187779 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR187/ERR187779/ERR187779.fastq.gz GBR 2 ERS185085 Homo sapiens NCBI Taxonomy 9606 lymphoblastoid cell line GBR 1 1 P-GEUV-1 P-GEUV-2 HG00101.1.M_111124_4 extract cDNA TRANSCRIPTOMIC 75 RNA-Seq PAIRED 280 0 P-GEUV-5 P-GEUV-6 UNIGE HG00101.1.M_111124_4 high_throughput_sequencing ERX162715 HG00101.1.M_111124_4_1.fastq.gz HG00101.1.M_111124_4_1.fastq.gz ERR188307 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188307/ERR188307_1.fastq.gz 75 76 P-GEUV-7 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEUV/E-GEUV-1/HG00101.1.M_111124_4.bam GBR 1 ERS185085 Homo sapiens NCBI Taxonomy 9606 lymphoblastoid cell line GBR 1 1 P-GEUV-1 P-GEUV-2 HG00101.1.M_111124_4 extract cDNA TRANSCRIPTOMIC 75 RNA-Seq PAIRED 280 0 P-GEUV-5 P-GEUV-6 UNIGE HG00101.1.M_111124_4 high_throughput_sequencing ERX162715 HG00101.1.M_111124_4_2.fastq.gz HG00101.1.M_111124_4_2.fastq.gz ERR188307 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188307/ERR188307_2.fastq.gz 75 76 P-GEUV-7 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEUV/E-GEUV-1/HG00101.1.M_111124_4.bam GBR 1 ERS185085 Homo sapiens NCBI Taxonomy 9606 lymphoblastoid cell line GBR 1 1 P-GEUV-1 P-GEUV-2 HG00101.1.MI_120104_4 extract cDNA TRANSCRIPTOMIC 36 OTHER SINGLE P-GEUV-3 P-GEUV-4 UNIGE HG00101.1.MI_120104_4 high_throughput_sequencing ERX162241 HG00101.1.MI_120104_4_1.fastq.gz HG00101.1.MI_120104_4_1.fastq.gz ERR187534 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR187/ERR187534/ERR187534.fastq.gz GBR 1 ERS185453 Homo sapiens NCBI Taxonomy 9606 lymphoblastoid cell line GBR 1 1 P-GEUV-1 P-GEUV-2 HG00102.3.M_120202_8 extract cDNA TRANSCRIPTOMIC 75 RNA-Seq PAIRED 280 0 P-GEUV-5 P-GEUV-6 MPIMG HG00102.3.M_120202_8 high_throughput_sequencing ERX162815 HG00102.3.M_120202_8_1.fastq.gz HG00102.3.M_120202_8_1.fastq.gz ERR188416 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188416/ERR188416_1.fastq.gz 75 76 P-GEUV-7 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEUV/E-GEUV-1/HG00102.3.M_120202_8.bam GBR 3 ERS185453 Homo sapiens NCBI Taxonomy 9606 lymphoblastoid cell line GBR 1 1 P-GEUV-1 P-GEUV-2 HG00102.3.M_120202_8 extract cDNA TRANSCRIPTOMIC 75 RNA-Seq PAIRED 280 0 P-GEUV-5 P-GEUV-6 MPIMG HG00102.3.M_120202_8 high_throughput_sequencing ERX162815 HG00102.3.M_120202_8_2.fastq.gz HG00102.3.M_120202_8_2.fastq.gz ERR188416 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188416/ERR188416_2.fastq.gz 75 76 P-GEUV-7 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEUV/E-GEUV-1/HG00102.3.M_120202_8.bam GBR 3 ERS185453 Homo sapiens NCBI Taxonomy 9606 lymphoblastoid cell line GBR 1 1 P-GEUV-1 P-GEUV-2 HG00102.3.MI_120120_6 extract cDNA TRANSCRIPTOMIC 36 OTHER SINGLE P-GEUV-3 P-GEUV-4 MPIMG HG00102.3.MI_120120_6 high_throughput_sequencing ERX162609 HG00102.3.MI_120120_6_1.fastq.gz HG00102.3.MI_120120_6_1.fastq.gz ERR187882 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR187/ERR187882/ERR187882.fastq.gz GBR 3 ERS185490 Homo sapiens NCBI Taxonomy 9606 lymphoblastoid cell line GBR 1 1 P-GEUV-1 P-GEUV-2 HG00103.4.M_120208_3 extract cDNA TRANSCRIPTOMIC 75 RNA-Seq PAIRED 280 0 P-GEUV-5 P-GEUV-6 ICMB HG00103.4.M_120208_3 high_throughput_sequencing ERX163006 HG00103.4.M_120208_3_1.fastq.gz HG00103.4.M_120208_3_1.fastq.gz ERR188136 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188136/ERR188136_1.fastq.gz 75 76 P-GEUV-7 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEUV/E-GEUV-1/HG00103.4.M_120208_3.bam GBR 4 ERS185490 Homo sapiens NCBI Taxonomy 9606 lymphoblastoid cell line GBR 1 1 P-GEUV-1 P-GEUV-2 HG00103.4.M_120208_3 extract cDNA TRANSCRIPTOMIC 75 RNA-Seq PAIRED 280 0 P-GEUV-5 P-GEUV-6 ICMB HG00103.4.M_120208_3 high_throughput_sequencing ERX163006 HG00103.4.M_120208_3_2.fastq.gz HG00103.4.M_120208_3_2.fastq.gz ERR188136 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188136/ERR188136_2.fastq.gz 75 76 P-GEUV-7 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEUV/E-GEUV-1/HG00103.4.M_120208_3.bam GBR 4 ERS185300 Homo sapiens NCBI Taxonomy 9606 lymphoblastoid cell line GBR 1 1 P-GEUV-1 P-GEUV-2 HG00104.1.M_111124_5 extract cDNA TRANSCRIPTOMIC 75 RNA-Seq PAIRED 280 0 P-GEUV-5 P-GEUV-6 UNIGE HG00104.1.M_111124_5 high_throughput_sequencing ERX162829 HG00104.1.M_111124_5_1.fastq.gz HG00104.1.M_111124_5_1.fastq.gz ERR188247 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188247/ERR188247_1.fastq.gz 75 76 P-GEUV-7 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEUV/E-GEUV-1/HG00104.1.M_111124_5.bam GBR 1 ERS185300 Homo sapiens NCBI Taxonomy 9606 lymphoblastoid cell line GBR 1 1 P-GEUV-1 P-GEUV-2 HG00104.1.M_111124_5 extract cDNA TRANSCRIPTOMIC 75 RNA-Seq PAIRED 280 0 P-GEUV-5 P-GEUV-6 UNIGE HG00104.1.M_111124_5 high_throughput_sequencing ERX162829 HG00104.1.M_111124_5_2.fastq.gz HG00104.1.M_111124_5_2.fastq.gz ERR188247 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188247/ERR188247_2.fastq.gz 75 76 P-GEUV-7 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEUV/E-GEUV-1/HG00104.1.M_111124_5.bam GBR 1 ERS185300 Homo sapiens NCBI Taxonomy 9606 lymphoblastoid cell line GBR 1 1 P-GEUV-1 P-GEUV-2 HG00104.1.MI_120104_4 extract cDNA TRANSCRIPTOMIC 36 OTHER SINGLE P-GEUV-3 P-GEUV-4 UNIGE HG00104.1.MI_120104_4 high_throughput_sequencing ERX162456 HG00104.1.MI_120104_4_1.fastq.gz HG00104.1.MI_120104_4_1.fastq.gz ERR187696 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR187/ERR187696/ERR187696.fastq.gz GBR 1	Derived Array Data File - - - - - - -
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