ArrayExpress

Released on 6 December 2012, last updated on 15 September 2013

Homo sapiens

Geuvadis RNA sequencing data set of 462 unrelated human lymphoblastoid cell line samples from the CEU, FIN, GBR, TSI and YRI populations from the 1000 Genomes sample collection was created by the Geuvadis consortium.
More details about RNA-seq Geuvadis project can be found here and from Lappalainen et al. Nature 2013.
This accession contains all mRNA and small RNA sequencing data regardless quality control status, mRNA data that passed quality control filters are available under accession E-GEUV-1, small RNA sequencing data also passed quality control filters are available under accession E-GEUV-2.

Link to bam files: bam files.
Link to genomic variation data used in analysis: genotyping data.
Link to analysis results (quantifications and eQTLs): analysis results.
Link to the Geuvadis data browser: Geuvadis Data Browser.

RNA-seq of coding RNA, RNA-seq of non coding RNA, operator variation design, population based design

Natalja Kurbatova <natalja@ebi.ac.uk>, Emmanouil Dermitzakis <emmanouil.dermitzakis@unige.ch>, Tuuli Lappalainen <Tuuli.Lappalainen@unige.ch>

Transcriptome and genome sequencing uncovers functional variation in humans. Lappalainen T., Sammeth M., Friedländer M.R., Hoen P. A. C., Monlong J., Rivas M.A., Gonzàlez-Porta M., Kurbatova N., Griebel T., Ferreira P.G., Barann M., Wieland T., Greger L., Iterson M., Almlöf J., Ribeca P., Pulyakhina I., Esser D., Giger T., Tikhonov A., Sultan M., Bertier G., MacArthur D.G., Lek M., Lizano E., Buermans H.P.J., Padioleau I., Schwarzmayr T., Karlberg O., Ongen H., Kilpinen H., Beltran S., Gut M., Kahlem K., Amstislavskiy V., Stegle O., Pirinen M., Montgomery S.B., Donnelly P., McCarthy M.I., Flicek P., Strom T.M., The Geuvadis Consortium, Lehrach H., Schreiber S., Sudbrak R., Carracedo A., Antonarakis S.E., Häsler R., Syvänen A., Ommen G., Brazma A., Meitinger T., Rosenstiel P., Guigó R., Gut I.G., Estivill X. null E.T. Nature  (2013)

ENA - ERP001942, ENA - ERP001941