E-GEUV-1 - RNA-sequencing of 465 lymphoblastoid cell lines from the 1000 Genomes

Released on 6 November 2012, last updated on 6 August 2014
Homo sapiens
Samples (462)
Protocols (5)
Geuvadis RNA sequencing data set of 462 unrelated human lymphoblastoid cell line samples from the CEU, FIN, GBR, TSI and YRI populations from the 1000 Genomes sample collection was created by the Geuvadis consortium.
More details about RNA-seq Geuvadis project can be found here and from Lappalainen et al. Nature 2013.
This accession contains mRNA sequencing data passed quality control, small RNA data from the same samples are available under accession E-GEUV-2, full Geuvadis RNA-seq dataset including all mRNA and small RNA data regardless quality control status is available under accession E-GEUV-3.

Link to bam files: bam files.
Link to genomic variation data used in analysis: genotyping data.
Link to analysis results (quantifications and eQTLs): analysis results.
Link to the Geuvadis data browser: Geuvadis Data Browser.
Experiment types
RNA-seq of coding RNA, operator variation design, population based design
Long-Range Modulation of PAG1 Expression by 8q21 Allergy Risk Variants. Vicente CT, Edwards SL, Hillman KM, Kaufmann S, Mitchell H, Bain L, Glubb DM, Lee JS, French JD, Ferreira MA. :329-336 (2015), Europe PMC 26211970
Transcriptome and genome sequencing uncovers functional variation in humans. Lappalainen T, Sammeth M, Friedlander MR, t Hoen PA, Monlong J, Rivas MA, Gonzalez-Porta M, Kurbatova N, Griebel T, Ferreira PG, Barann M, Wieland T, Greger L, van Iterson M, Almlof J, Ribeca P, Pulyakhina I, Esser D, Giger T, Tikhonov A, Sultan M, Bertier G, MacArthur DG, Lek M, Lizano E, Buermans HP, Padioleau I, Schwarzmayr T, Karlberg O, Ongen H, Kilpinen H, Beltran S, Gut M, Kahlem K, Amstislavskiy V, Stegle O, Pirinen M, Montgomery SB, Donnelly P, McCarthy MI, Flicek P, Strom TM, Geuvadis Consortium, Lehrach H, Schreiber S, Sudbrak R, Carracedo A, Antonarakis SE, Hasler R, Syvanen AC, van Ommen GJ, Brazma A, Meitinger T, Rosenstiel P, Guigo R, Gut IG, Estivill X, Dermitzakis ET. Nature 501(7468):506-511 (2013), Europe PMC 24037378
Exp. designProtocolsVariablesProcessedSeq. reads
Investigation descriptionE-GEUV-1.idf.txt
Sample and data relationshipE-GEUV-1.sdrf.txt
Processed data (462)Click to browse processed data