E-GEOD-9919 - CGH analysis of Campylobacter jejuni isolates previously analyzed by Multi-Locus Sequence Typing

Status
Released on 21 April 2008, last updated on 2 May 2014
Organism
Campylobacter jejuni
Samples (90)
Array (1)
Protocols (7)
Description
In this experiment, we hava analyzed a set of 45 C. jejuni strains by CGH and MLST in order to investigate whether the strain relationships inferred from the analysis of a small number of loci (MLST) reflect whole-genome gene conservation patterns observed by CGH. We performed microarray CGH on 45 strains previously characterized by MLST. Genomic DNA from each experimental strain was compared in a CGH experiment against the reference strain NCTC 11168. We measured signal intensity for each tester strain versus the control strain NCTC 11168. Values represent mean of replicate spots. Replicate arrays are not included.
Experiment type
unknown experiment type 
Contacts
Eduardo N Taboada <taboadae@inspection.gc.ca>, Christian C Luebbert, Joanne M MacKinnon, John H Nash, Kris Rhan, Victor P Gannon
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-9919.idf.txt
Sample and data relationshipE-GEOD-9919.sdrf.txt
Raw data (1)E-GEOD-9919.raw.1.zip
Processed data (1)E-GEOD-9919.processed.1.zip
Array designA-GEOD-2681.adf.txt
Links