E-GEOD-8834 - Transcription profiling of human MCL1 over-expressing B-NHL cells

Status
Submitted on 21 August 2007, released on 16 June 2008, last updated on 2 May 2014
Organism
Homo sapiens
Samples (8)
Array (1)
Protocols (5)
Description
To get insight into the mechanisms of MCL1-induced survival and transformation, we screened 41,000 human genes in a genome-wide gene expression profile analysis of MCL1 over-expressing B-NHL cells. Experiment Overall Design: Two-color (Cy5-CTP/ Cy3-CTP) microarray-based gene expression formats presenting high-density oligonucleotide probes printed on a single glass slide were used (Agilent technologies, Cat No# G4112A whole human genome 41K). Total RNAs from MCL1 over-expressing RAMOS RA-1 and Z-138 B-cells were labeled with Cy5-CTP, whereas RNAs from references (empty vector/ RAMOS RA-1 and empty vector/ Z-138 B-cells) were labeled with Cy3-CTP. After competitive hybridization [RNA-Cy5 from MCL1 over-expressing RAMOS RA-1 or MCL1 over-expressing Z-138 versus RNA-Cy3 from either empty vector/ RAMOS RA-1 or empty vector/ Z-138 respectively] gene expression data were pre-processed using Feature Extraction software and GEPAS tools (http://gepas.bioinfo.cipf.es/).
Experiment types
transcription profiling by array, unknown experiment type
Contact
Citation
Lentiviral (HIV)-based RNA interference screen in human B-cell receptor regulatory networks reveals MCL1-induced oncogenic pathways. Ruiz-Vela A, Aggarwal M, de la Cueva P, Treda C, Herreros B, Martín-Pérez D, Dominguez O, Piris MA.
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-GEOD-8834.idf.txt
Sample and data relationshipE-GEOD-8834.sdrf.txt
Processed data (1)E-GEOD-8834.processed.1.zip
Array designA-AGIL-11.adf.txt
Links