E-GEOD-8832 - Transcription profiling by array of human K562 cells treated with 1R-Chl

Status
Released on 16 June 2008, last updated on 30 April 2015
Organism
Homo sapiens
Samples (6)
Array (1)
Protocols (8)
Description
To determine whether the polyamide-Chl conjugate 1R-Chl would cause similar changes in global gene expression in K562 cells, affymetrix gene chip analysis was performed using 1R-Chl. Through class comparison analysis, 1R-Chl affected the levels of transcription and genes of interest were determined. Experiment Overall Design: K562 cells were incubated with 1R-Chl (at 250 nM) or in the absence of polyamide, in triplicate for 24 h before RNA purification and microarray analysis at The Scripps Research Institute microarray facility. Affymetrix U133A Plus 2.0 GeneChips were hybridized in groups of three for each of the two groups. The Affymetrix probe set data were imported into BRB Arraytools (3.5.0 Beta 2), selecting the U133 chips used in the experiment and leaving all filters off.
Experiment types
transcription profiling by array, compound treatment design
Contact
Citation
Small molecules targeting histone H4 as potential therapeutics for chronic myelogenous leukemia. Chou CJ, Farkas ME, Tsai SM, Alvarez D, Dervan PB, Gottesfeld JM.
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-8832.idf.txt
Sample and data relationshipE-GEOD-8832.sdrf.txt
Raw data (1)E-GEOD-8832.raw.1.zip
Processed data (1)E-GEOD-8832.processed.1.zip
Array designA-AFFY-44.adf.txt
Links