E-GEOD-8428 - Transcription profiling of mouse control embryos and pbx2-MO;pbx4-MO embryos at 10 somites and at 18 somites.

Status
Released on 16 June 2008, last updated on 12 October 2011
Organism
Danio rerio
Samples (12)
Array (1)
Protocols (6)
Description
Pbx homeodomain proteins have been implicated in the regulation of gene expression during muscle development. Whether Pbx proteins are required broadly for the regulation of muscle gene expression or are required for the expression of a specific subset of muscle gene expression is not known. We employed microarrays to determine the requirements for Pbx proteins during zebrafish development. Experiment Overall Design: Total RNA samples from control and pbx2-MO;pbx4-MO embryos were collected at two developmental stages: 10 somites and 18 somites. Their expression profiles were analyzed using Affymetrix zebrafish genome arrays, and the differentially hybridized genes were determined to be significant according to a FDR<0.05.
Experiment types
transcription profiling by array, unknown experiment type
Contact
Citation
Pbx homeodomain proteins direct Myod activity to promote fast-muscle differentiation. Lisa Maves, Andrew Jan Waskiewicz, Biswajit Paul, Yi Cao, Ashlee Tyler, Cecilia B Moens, Stephen J Tapscott.
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-GEOD-8428.idf.txt
Sample and data relationshipE-GEOD-8428.sdrf.txt
Raw data (1)E-GEOD-8428.raw.1.zip
Processed data (1)E-GEOD-8428.processed.1.zip
Array designA-AFFY-38.adf.txt
R ExpressionSetE-GEOD-8428.eSet.r
Links