E-GEOD-8070 - Transcription profiling of mouse pancreas development in NMRI embryos on consecutive days from e12.5 to e16.5

Status
Submitted on 8 June 2007, released on 6 November 2008, last updated on 10 June 2011
Organism
Mus musculus
Samples (30)
Arrays (3)
Protocols (3)
Description
Development of the pancreas from the endoderm is initiated at embryonic day 9 of mouse development and over the following days several different cell types develop from pancreas progenitor cells. A distinct phase of pancreas development, known as the secondary transition, is initiated at day 13 of development and one of the key features of this transition is a massive increase in the number of mature endocrine cells. To study gene expression in pancreas during the secondary transition we performed high-density oligonucleotide microarray experiments on dorsal pancreas tissue isolated from NMRI embryos on consecutive days from e12.5 to e16.5. Experiment Overall Design: Dorsal pancreata were isolated from embryos at embryonic day 12.5, 13.5, 14.5, 15.5, and 16.5 and pooled litter-wise prior to total RNA extraction. From each pool, two independent labelling reactions were made, and each sample was hybridized to the entire Murine Genome U74 version 2 chip set (A, B, and C).
Experiment types
transcription profiling by array, development or differentiation;transcription profiling
Contact
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-GEOD-8070.idf.txt
Sample and data relationshipE-GEOD-8070.sdrf.txt
Raw data (1)E-GEOD-8070.raw.1.zip
Processed data (1)E-GEOD-8070.processed.1.zip
Array designsA-AFFY-6.adf.txt, A-AFFY-7.adf.txt, A-AFFY-8.adf.txt
R ExpressionSetE-GEOD-8070.eSet.r
Links