E-GEOD-6563 - Transcription profiling of C. elegans daf-19(+) and daf-19(-) mutants

Status
Submitted on 18 December 2006, released on 14 June 2008, last updated on 27 March 2012
Organism
Caenorhabditis elegans
Samples (4)
Array (1)
Protocols (6)
Description
By screening for genes possessing canonical X-box sequences in promoters of three Caenorhabditis species, namely C. elegans, C. briggsae and C. remanei, we identified 93 genes (including known X-box regulated genes) that encode putative components of ciliated neurons in C. elegans and are subject to the same regulatory control. For many of these genes, restricted anatomical expression in ciliated cells was confirmed, and control of transcription by the ciliogenic DAF-19 RFX transcription factor was demonstrated by comparative transcriptional profiling of daf-19(+) and daf-19(-) animals. Experiment Overall Design: There 4 samples.
Experiment types
transcription profiling by array, unknown experiment type
Contact
Citation
Identification of ciliary and ciliopathy genes in Caenorhabditis elegans through comparative genomics. Nansheng Chen, Allan Mah, Oliver E Blacque, Jeffrey Chu, Kiran Phgora, Mathieu W Bakhoum, C Rebecca Hunt Newbury, Jaswinder Khattra, Susanna Chan, Anne Go, Evgeni Efimenko, Robert Johnsen, Prasad Phirke, Peter Swoboda, Marco Marra, Donald G Moerman, Michel R Leroux, David L Baillie, Lincoln D Stein. Genome Biol 7(12):R126 (2006)
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-GEOD-6563.idf.txt
Sample and data relationshipE-GEOD-6563.sdrf.txt
Raw data (1)E-GEOD-6563.raw.1.zip
Processed data (1)E-GEOD-6563.processed.1.zip
Array designA-AFFY-60.adf.txt
R ExpressionSetE-GEOD-6563.eSet.r
Links