E-GEOD-58380 - Flag-RBM47 HITS-CLIP in brain metastatic derivatives of MDA-MB-231

Status
Released on 11 June 2014, last updated on 13 August 2014
Organism
Homo sapiens
Samples (2)
Protocols (3)
Description
Brain metastatic breast cancer cells were subjected to HITS-CLIP to identify the targets of the RNA binding protein RBM47 MDA231-BrM2a is characterized in PMID: 19421193; Related data published together with these data are found in GSE53779 Non-clonal brain metastatic breast cancer cells stably expressing Flag-tagged, wild-type RBM47 under a doxycline-inducible promoter were treated for three days with doxycycline then UV-irradiated and subjected to Flag HITS-CLIP
Experiment type
other 
Contacts
Christina Beate Marney <geo@ncbi.nlm.nih.gov>, Aldo Mele, Christina B Marney, Robert B Darnell
Citation
Loss of the multifunctional RNA-binding protein RBM47 as a source of selectable metastatic traits in breast cancer. Vanharanta S, Marney CB, Shu W, Valiente M, Zou Y, Mele A, Darnell RB, Massagu� J. , Europe PMC 24898756
MINSEQE
Exp. designProtocolsFactorsProcessedSeq. reads
Files
Investigation descriptionE-GEOD-58380.idf.txt
Sample and data relationshipE-GEOD-58380.sdrf.txt
Links