E-GEOD-58354 - Transcriptomic analysis of wild-type (WT) and curled-cotyledon(cco) mutant in soybean

Status
Released on 11 June 2014, last updated on 14 August 2014
Organism
Glycine max
Samples (2)
Protocols (3)
Description
Soybean is one of the most economically important crops in the world. The cotyledon is the nutrient storage area in seeds, and it is critical for seed quality and yield. Cotyledon mutants are important for the genetic dissection of embryo patterning and seed development.Here, we characterised a soybean curled-cotyledon (cco) mutant. Compared with wild-type (WT), the entire embryos of cco mutant resembled the “tail of swallow”. To explore the molecular mechanisms underlying soybean cotyledon development, we executed RNA-Seq using the Illumina HiSeq2000 system. Pods at 7DAF collected from WT and cco were analyzed by RNA-seq.
Experiment type
RNA-seq of coding RNA 
Contacts
Shi Guixia <geo@ncbi.nlm.nih.gov>, Deyue Yu, Guixia Shi
MINSEQE
Exp. designProtocolsFactorsProcessedSeq. reads
Files
Investigation descriptionE-GEOD-58354.idf.txt
Sample and data relationshipE-GEOD-58354.sdrf.txt
Processed data (1)E-GEOD-58354.processed.1.zip
Links