E-GEOD-57033 - Life on the edge: Functional genomic response of Ignicoccus hospitalis to cellular takeover by Nanoarchaeum equitans

Status
Released on 24 April 2014, last updated on 6 May 2014
Organism
Ignicoccus hospitalis KIN4/I
Samples (16)
Array (1)
Protocols (7)
Description
Investigation of changes in global gene expression patterns as Ignicoccus hospitalis becomes increasingly populated by Nanoarchaeum equitans These microarray data are complemented by shot gun proteomics (see manuscript) A total of 16 chips were used (each experimental sample was done in duplicate, totally 8 samples) to examine total RNA from I. hospiatalis over a time course grown in pure culture and in co-culture with N. equitans.
Experiment type
transcription profiling by array 
Contacts
Louie Wurch <lwurch@whoi.edu>, Harold Huber, Louie L Wurch, Mircea Podar, Reinhard Rachel, Richard J Giannone, Robert L Hettich, Stanton Martin, Thomas Heimerl, Zamin Yang
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-57033.idf.txt
Sample and data relationshipE-GEOD-57033.sdrf.txt
Raw data (2)E-GEOD-57033.raw.1.zip, E-GEOD-57033.raw.2.zip
Processed data (1)E-GEOD-57033.processed.1.zip
Array designA-GEOD-18605.adf.txt
Links