E-GEOD-56800 - Systems analysis of the response of photosynthesis, metabolism and growth to an increase in irradiance in the photosynthesis model organism Chlamydomonas reinhardtii

Status
Released on 30 April 2014, last updated on 3 June 2014
Organism
Chlamydomonas reinhardtii
Samples (20)
Array (1)
Protocols (7)
Description
Systems analysis reveals that Chlamydomonas reinhardtii responds rapidly and flexibly to an increase in light intensity. Rising metabolite levels and post-translation regulation facilitate a rapid increase in the rate of carbon fixation and a slightly delayed increase in the rate of growth, and slower changes in protein abundance adjust allocation and minimize bottlenecks in the new conditions. Gene expression was measured from samples of Chlamydomonas reinhardtii cell cultures at four time points (two under low, four under high light) under either low (41 µmol) or high (145 µmol) light conditions in two separate bioreactors. Three biological replicate time series were sampled.
Experiment type
transcription profiling by array 
Contacts
Samuel Arvidsson <geo@ncbi.nlm.nih.gov>, Adam Idoine, Alexander Erban, Anne Arnold, Asdrubal Burgos, Bernd Mueller-Roeber, Bettina Seiwert, Daniel Veyel, Daniel Vosloh, Dorothea Hemme, Flavia Vischi Winck, Frederik Sommer, Jens Rupprecht, Joachim Kopka, Liliya Yaneva-Roder, Lothar Willmitzer, Manuela Günther, Marc Lohse, Mark Stitt, Mark-Aurel Schöttler, Michael Schroda, Ralph Bock, Stephanie Schönfelder, Sunil Kumar Pal, Tabea Mettler, Timo Mühlhaus, Ursula Krause, Zoran Nikoloski
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-GEOD-56800.idf.txt
Sample and data relationshipE-GEOD-56800.sdrf.txt
Raw data (1)E-GEOD-56800.raw.1.zip
Processed data (1)E-GEOD-56800.processed.1.zip
Array designA-GEOD-18571.adf.txt
Links