E-GEOD-56627 - seq-UP07329_H4K16ac:JBC1888188_N2_L3

Status
Released on 10 April 2014, last updated on 1 June 2014
Organism
Caenorhabditis elegans
Samples (4)
Protocols (3)
Description
Project Goal: The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. Our 126 strategically selected targets include key histone modifications and histone variants. We will integrate information generated with existing knowledge on the biology of the targets and perform ChIP-seq analysis on mutant and RNAi extracts lacking selected target proteins. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf EXPERIMENT TYPE: CHIP-seq. BIOLOGICAL SOURCE: Strain: N2; Developmental Stage: L3 Larva; Genotype: wild type; Sex: mixed Male and Hermaphrodite population. EXPERIMENTAL FACTORS: Developmental Stage L3 Larva; temperature 20 degree Celsius; Strain N2; Antibody UP07329 H4K16ac:JBC1888188 (target is H4K16ac).
Experiment type
ChIP-seq 
Contacts
Przemyslaw Aleksander Stempor <geo@ncbi.nlm.nih.gov>, Alex Appert, Julie Ahringer, Przemyslaw Stempor
MINSEQE
Exp. designProtocolsFactorsProcessedSeq. reads
Files
Investigation descriptionE-GEOD-56627.idf.txt
Sample and data relationshipE-GEOD-56627.sdrf.txt
Processed data (1)E-GEOD-56627.processed.1.zip
Links