E-GEOD-56465 - Comparison of haploid and diploid clones of KBM7 cancer cell line

Status
Released on 10 April 2014, last updated on 3 June 2014
Organism
Homo sapiens
Samples (38)
Array (1)
Protocols (7)
Description
The series were performed to study the changes in gene expression upon diploidization of KBM7 cancer (CML) cell line. The line can exist either as a clone with 24 chromosomes (nearly haploid) or with 48 chromosomes (nearly diploid). Gene expression patterns are largely ploidy-independent, as suggested by this experiment Single cell derived clones of KBM7 cell line were grown. Included 7 haploid and 10 diploid clones, each with 2 independent total RNA extraction/microarray run. Also included peripheral blood mononuclear cells (PBMC) samples for comparison purposes.
Experiment type
transcription profiling by array 
Contacts
Yan Feng, Yegor Smurnyy
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-GEOD-56465.idf.txt
Sample and data relationshipE-GEOD-56465.sdrf.txt
Raw data (1)E-GEOD-56465.raw.1.zip
Processed data (1)E-GEOD-56465.processed.1.zip
Array designA-AFFY-44.adf.txt
Links