E-GEOD-52541 - microRNA profiling in pediatric AML

Status
Released on 1 January 2014, last updated on 11 June 2014
Organism
Homo sapiens
Samples (90)
Array (1)
Protocols (6)
Description
MicroRNAs (miRNAs) play a pivotal role in the regulation of hematopoiesis and development of leukemia. Great interest emerged in modulating miRNA expression for therapeutic purposes. In order to identify miRNAs, which specifically suppress leukemic growth of AML with t(8;21), inv(16) or MLL-rearrangement by inducing differentiation, we conducted a miRNA expression profiling in a cohort of 90 cytogenetically characterized, de novo pediatric AML cases. Four miRNAs, specifically downregulated in MLL-rearranged, t(8;21) or inv(16) AMLs, were characterized by their tumor suppressive properties in cell lines representing those respective cytogenetic groups. Among those, forced expression of miR-9 reduced leukemic growth and induced monocytic differentiation of t(8;21) AML cell lines in vitro and in vivo. The tumor suppressive functions of miR-9 were specifically restricted to AML cell lines and primary leukemic blasts with t(8;21). On the other hand, these functions were not evident in AML blasts from patients with MLL-rearrangements. We showed that miR-9 exerts its effects through the cooperation with let-7 to repress the oncogenic LIN28B/HMGA2 axis. Thus, miR-9 is a tumor suppressor-miR which acts in a stringent cell context-dependent manner. In order to identify miRNAs, which specifically suppress leukemic growth of AML with t(8;21) (n=21), inv(16) (n=17) or MLL-rearrangement (n=35) by inducing differentiation, we conducted a miRNA expression profiling in a cohort of 90 cytogenetically characterized, de novo pediatric AML cases, which also included 12 t(15;17) and 5 t(7;12) samples.
Experiment type
transcription profiling by RT-PCR 
Contacts
André Baruchel, Astrid A Danen-van Oorschot, C M Zwaan, Dirk Reinhardt, Felix Engeland, Ferhat Dasci, Jan H Klusmann, Jan Stary, Jenny E Katsman-Kuipers, Kerstin Henke, Lonneke Verboon, Maarten Fornerod, Marry M van den Heuvel-Eibrink, Mona El Khatib, Monique L den Boer, Razan Jammal, Rob Pieters, Stephan Emmrich, Valerie de Haas
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-GEOD-52541.idf.txt
Sample and data relationshipE-GEOD-52541.sdrf.txt
Processed data (1)E-GEOD-52541.processed.1.zip
Array designA-GEOD-16566.adf.txt
Links