E-GEOD-5245 - Transcription profiling of mouse CD4+ T cells responding to transient or persistent antigen presented by dendritic cells in vivo

Status
Submitted on 6 July 2006, released on 13 June 2008, last updated on 2 May 2014
Organism
Mus musculus
Samples (16)
Array (1)
Protocols (9)
Description
These experiments were done to compare the gene expression profiles in CD4+ T cells responding to antigen presented by dendritic cells transiently or persistently. Some treatments include the activation of the dendritic cells by CD40 engagement. Experiment Overall Design: 2-4x106 lymph node cells from AND TCR-transgenic animals that expressed the congenic marker CD90.1 were transferred into double-transgenic (Ii-rTA/TIM) recipient animals that expressed the corresponding peptide from moth cytochrome c under a doxycycline-controllable promoter and were FACS-sorted 60 hours later. Recipients expressed the antigen not at all (“ctrl”), transiently (“short”) or throughout the experiment (“long”) due to different doxycycline treatment protocols. A second variable tested was the activation status of the dendritic cells: recipients were either injected by the stimulatory antibody FGK45.5 targeting CD40 (“FGK”) or PBS (“PBS”).
Experiment types
transcription profiling by array, unknown experiment type
Contact
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-GEOD-5245.idf.txt
Sample and data relationshipE-GEOD-5245.sdrf.txt
Raw data (1)E-GEOD-5245.raw.1.zip
Processed data (1)E-GEOD-5245.processed.1.zip
Array designA-AFFY-45.adf.txt
R ExpressionSetE-GEOD-5245.eSet.r
Links