E-GEOD-52052 - Comparison of gene expression at day 11 of iPSC reprogramming with different reprogramming cocktails

Status
Released on 20 November 2013, last updated on 3 June 2014
Organism
Homo sapiens
Samples (6)
Array (1)
Protocols (7)
Description
To identify genes altered upon LIN-41 expression during reprogramming to induced pluripotent stem cells, human dermal fibroblasts were infected with combinations of GFP alone, OSK, OSKM, OSK+LIN-41, or OSK+let-7 inhibitor (transfected on days 1 and 6). After 11 days, TRA-1-60+ reprogramming cells were isolated as described in Tanabe et al 2013 or in the case of GFP-infected fibroblasts, GFP+ cells were collected. Total RNA was used for gene expression analysis. After 11 days of reprogramming with OSK, OSK+let-7inh, OSKM, or OSK+LIN-41, TRA-1-60+ cells were isolated and total RNA was isolated.
Experiment type
transcription profiling by array 
Contacts
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-52052.idf.txt
Sample and data relationshipE-GEOD-52052.sdrf.txt
Raw data (1)E-GEOD-52052.raw.1.zip
Processed data (1)E-GEOD-52052.processed.1.zip
Array designA-GEOD-14550.adf.txt
Links