E-GEOD-5156 - Transcription profiling of mouse laser captured small intestine isolated fom normal and germ free animals

Status
Submitted on 26 June 2006, released on 13 June 2008, last updated on 27 March 2012
Organism
Mus musculus
Samples (4)
Array (1)
Protocols (6)
Description
This study delineated how small intestinal resident microflora impact gene expression in Paneth cells. Experiment Overall Design: Paneth cells were isolated by laser capture microdissection from the small intestines of germ-free and conventionalized (10 day) mice. RNAs from 3 mice per group were pooled, and duplicate RNAs from each group were amplified and hybridized to Affymetrix arrays.
Experiment types
transcription profiling by array, growth condition
Contact
Citation
Symbiotic bacteria direct expression of an intestinal bactericidal lectin. Heather L Cash, Cecilia V Whitham, Cassie L Behrendt, Lora V Hooper. Science 313(5790):1126-30 (2006)
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-GEOD-5156.idf.txt
Sample and data relationshipE-GEOD-5156.sdrf.txt
Raw data (1)E-GEOD-5156.raw.1.zip
Processed data (1)E-GEOD-5156.processed.1.zip
Array designA-AFFY-45.adf.txt
R ExpressionSetE-GEOD-5156.eSet.r
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