E-GEOD-51429 - A microRNA-based primary tumor site classification of liver core biopsies

Status
Released on 19 October 2013, last updated on 11 June 2014
Organism
Homo sapiens
Samples (333)
Array (1)
Protocols (7)
Description
To develop a classifier based on microRNAs for primary tumor site identification of liver core biopsies and to explore the influence of surrounding normal liver tissue on classification. Tissue samples from 333 patients, corresponding to one of the following ten assay classes, were obtained from archives of the pathology department, Copenhagen University Hospital, Rigshospitalet, Denmark: Lung cancer, breast cancer, gastric/cardia cancer, colorectal cancer, bladder cancer, pancreatic cancer, hepatocellular carcinoma, cholangiocarcinoma, squamous cell cancers of different origin, and normal liver tissue
Experiment type
transcription profiling by RT-PCR 
Contacts
Katharina Anne Perell <katharina.anne.perell@regionh.dk>, Anne K Møller, Ben Vainer, Birgitte Federspiel, Bodil L Petersen, Finn C Nielsen, Gedske Daugaard, Katharina Perell, Lennart Friis-Hansen, Martin Vincent, Mette Madsen, Niels R Hansen
Citation
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-GEOD-51429.idf.txt
Sample and data relationshipE-GEOD-51429.sdrf.txt
Processed data (1)E-GEOD-51429.processed.1.zip
Array designA-GEOD-17391.adf.txt
Links