E-GEOD-51415 - Transcription profiling by high throughput sequencing of retinoic acid treated human oral squamous cell carcinoma cells and normal cells
Released on 19 October 2013, last updated on 5 April 2016
To gain insight into the molecular changes during OSCC carcinogenesis, we performed unbiased, whole genome deep sequencing (RNA-seq) using RNA isolated from cultured, human TERT-immortalized, non-tumorigenic OKF6-TERT1R and OSCC SCC-9 cells. OKF6-TERT1R cells and SCC-9 cells were plated in 10 cm2 tissue culture plates at the density of 2 × 106 cells/plate and treated with 1 μM RA or vehicle (0.1% ethanol) for 48 hours. Experiment includes 3 independent biological replicates. Note: All samples in SRA were assigned the same sample accession (GSM1245064 1). This is incorrect as there are different samples, hence “Source Name” was replaced with new values. Comment[ENA_SAMPLE] contains the original SRA sample accessions.
RNA-seq of coding RNA
Katarzyna Maria Marcinkiewicz <email@example.com>, Katarzyna M Marcinkiewicz, Lorraine J Gudas
Altered epigenetic regulation of homeobox genes in human oral squamous cell carcinoma cells. Marcinkiewicz KM, Gudas LJ. , Europe PMC 24076275