E-GEOD-51359 - MicroRNA profiling of primary cutaneous large B-cell lymphomas

Status
Released on 18 October 2013, last updated on 15 April 2014
Organism
Homo sapiens
Samples (23)
Protocols (2)
Description
High-throughput sequencing of primary cutaneous follicle center lymphoma (PCFCL), primary cutaneous diffuse large B-cell lymphoma, leg type (PCLBCL-LT) and in vitro activated peripheral blood B-cells. We performed high-throughput sequencing analysis on frozen tumor biopsies from 19 cases of PCFCL and PCLBCL-LT to establish microRNA profiles. Cluster analysis of the complete microRNome could not distinguish between the two subtypes, but 16 single microRNAs were found to be differentially expressed. Lymphoma miRNA profiles of were generated by deep sequencing, using Illumina Genome Analyzer II.
Experiment type
RNA-seq of non coding RNA 
Contacts
Lianne Koens <l.koens@lumc.nl>, C P Tensen, L Koens, W Y Leung
Citation
MicroRNA profiling of primary cutaneous large B-cell lymphomas. Koens L, Qin Y, Leung WY, Corver WE, Jansen PM, Willemze R, Vermeer MH, Tensen CP. , Europe PMC 24358187
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-GEOD-51359.idf.txt
Sample and data relationshipE-GEOD-51359.sdrf.txt
Links