E-GEOD-50923 - Genome-wide methylation analyses in glioblastoma multiforme (GBM)

Status
Released on 18 October 2013, last updated on 3 June 2014
Organism
Homo sapiens
Samples (78)
Array (1)
Protocols (5)
Description
Our main objective was to study genome-wide differential methylation in de novo glioblastoma multiforme (GBM, grade IV glioma). We evaluated CpG sites in gene promoters of 26,000+ genes using an array-based chip. We retrieved 54 GBM from biorepositories of two institutions(40 from Columbia University and 14 from Case Western Reserve University) and 24 control brain tissues from the New York Brain Bank, which collected control brain tissues from consented subjects without history of neurological diseases at autopsy. Bisulfite modified DNA was extracted from 54 GBM and 24 control brain tissue. The HumanMethylation27 Analysis Bead-Chips (Illumina) were used to interrogate 26,486 informative CpG sites in the autosomes.
Experiment type
methylation profiling by array 
Contacts
Rose K Lai <Rose.Lai@med.usc.edu>, Andrew E Sloan, Annette Lee, Charu Sharma, Darryl Nousome, Etty Cortes, Irina Gurvich, Jean-Paul Vonsattel, Jeffrey Bruce, Jill Barnholtz-Sloan, Lissette Delgado-Cruzata, Peter Canoll, Peter Gregersen, Quinn Ostrom, Regina M Santella, Tao Su, Xiaowei Guan, Yanwen Chen
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-GEOD-50923.idf.txt
Sample and data relationshipE-GEOD-50923.sdrf.txt
Processed data (1)E-GEOD-50923.processed.1.zip
Array designA-GEOD-8490.adf.txt
Links